Krista Ternus
Krista Ternus
Hi @termithorbor, I hit the same error and was able to overcome it by running this command first: `options(download.file.method = "wininet")` I hope that helps!
Hi @axiao19, could you try running this command and share the results? singularity version
Great, thanks! Can you try this command next? That is an equivalent command for what the metscale scripts are doing to download the singularity images. singularity pull docker://quay.io/biocontainers/fastqc:0.11.7--pl5.22.0_2
@axiao19 Thanks for bringing this issue to our attention! We were able to replicate the error with singularity version 4.0.1 on ubuntu20. It seems to be happening on all the...
Very cool, thanks for sharing @mtisza1!
Thanks, Daniel! You are correct, in that the workflows currently require input files to be located in a specific directory and follow particular naming conventions. We can definitely review the...
Yes, there are a lot of rules to fit into a single command, and this issue is only going to be amplified in the future as we add more rules!...