korin albert

icon indicating a website link selalab.org icon indicating an email [email protected]

icon company University of Massachusetts Amherst icon location MA, USA icon location graduate student @ umass amherst working on bifidobacteria genomics

Results 4 issues of korin albert

data cannot be displayed?

2 comment

I'm using the gene_presence_absence.csv output from Roary. When I upload my file, I get an error saying "heads up, blocks provided without a tree, so this data cannot be displayed"....

newest versions of spades and unicycler still produce SPAdes "too old" error

3 comment

Hi, I'm trying to run Unicycler on MacOS Mojave. I am getting the issue described here (https://github.com/rrwick/Unicycler/issues/98) which says "Error: Unicycler requires SPAdes v3.6.2 or higher" even though I'm using...

Only 2% for core percentage

Hi, I used parsnp on 26 bacterial genomes from the same subspecies, each about 2.8 Mb in length. The reference genome is a single chromosome, but all of the other...

some "group_" core genes missing from pan_genome_reference.fa file

1 comment

Hi, There are core genes listed in my gene_presence_absense.csv file that aren't included in my pan_genome_reference.fa file. All of the missing genes happen to be from the "group_" category. Of...