Justin Kirby

using collection names with spaces in them breaks tcia_dataset.ipynb

3

**Describe the bug** In the "Create TciaDataset" step of the notebook if you enter a collection with spaces (e.g. "Lung Phantom") into the collection variable it produces an error. Here...

port tcia-related code to tcia_utils

1

**Is your feature request related to a problem? Please describe.** It would be excellent if we could improve users' ability to query/download datasets from The Cancer Imaging Archive and load...

If I install Jupyter Notebook after having installed pydicom-seg it returns this dependency error: ERROR: pip's dependency resolver does not currently take into account all the packages that are installed....

Hi, I'm just starting to investigate the use of this tool as we have been relying on https://mircwiki.rsna.org/index.php?title=MIRC_CTP_Articles for years now, but it has some shortcomings that have led me...

TCIA data usage policy compliance and suggestions for TCIA integration

14

Hi, apologies for ignoring the issue template but I don't think my inquiry fits the mold. I have 2 things I'd like to raise with you all. 1. It appears...

If a user logs in and then tries to access data a few hours later after their login token has expired they get an error that doesn't provide any clue...

generic conversion scripts for bringing TCIA data into SALT/MONAI

3

This looks really cool! I noticed that you've used a few datasets from The Cancer Imaging Archive as I'm seeing names like SAROS, LCTSC, CT-ORG and that you provided some...

Consider adding DICOM attributes to feature extraction output

2

Please use the below template to submit your issue: # Expected behaviour In the output of extract_features() when working with DICOM data I think it would be helpful to add...

I think this will fix downloads from TCIA so that you're getting the latest datasets via our newer API. Once you confirm this works properly, feel free to close https://github.com/pyplati/platipy/issues/276...

TCIA functionality is using a deprecated API

1

It looks like you're accessing https://services.cancerimagingarchive.net/services/v4/TCIA to access data from TCIA. We deprecated this version of the API in 2022 so you're pulling stale information in terms of the list...