Kirat Alreja

icon indicating a website link https://ncig.anu.edu.au

icon company National Center for Indegenous Genomics icon location Canberra icon location Bioinformatician at The Australian National University, Canberra

Results 4 comments of Kirat Alreja

Robot pattern

Hi, can I work on this issue? Thanks! @mibac138

Embedded Value pattern

Hi, can I take up this issue as a part of an Australian National University group project? Thanks @iluwatar

How to deal with extremely high mapping rate?

Those could be centromeric/satellite repeat regions. If so, the higher mapping rate is expected. Use tools like Flagger/Inspector to check the collapsed & duplicated regions of the assembly.

How to deal with extremely high mapping rate?

If you have PacBio subreads data, run DeepConsensus for error-correction before assembly with hifiasm. Also make sure you run adapter trimming. After the assembly is done, you can use Inspector/similar...