kikegoni
kikegoni
Hey @rob-p @mdshw5 , First, thanks a lot for implementing salmon, it is super helpful. Has this been achieved? I would like to visualise the ```salmon quant```output in IGV. I...
Hey @Yenaled , Thanks a lot for your fast answer!!! Perfect, understood!! I will experiment around with **kallisto bus** applied to bulk RNA-seq! Best, Kike
Hey, First of all thanks for developing Kallisto-Bustools for scRNA-seq, it is super useful!! I just wanted to follow @marencc and ask if there is Kallisto bustools is suited for...
Hey, Thanks a lot for your help and your fast answer! My question is more about if Kallisto bus is able to work with 10x 5' in paired-end mode. So...
Hey, Thanks a lot for your fast reply!! I can confirm it works now, thanks a lot!!! Best, Kike
I think that this is done in order to identify from where to where goes your Cell Barcode, UMI and cDNA sequence. So the first part of your string (0,0,16)...
Yes, I read that chapter and I like it a lot, but as you said, each of my sce1 and sce2 consists of only one sample so I cannot apply...
Thanks a lot for your response!! Yes, I understand that any statistics test is going to work for DE genes if n=1 in both groups. But for visually comparing the...
Perfect! Understood! Thanks a lot for your help!! Best, Kike
Same here, any updates?