Sameesh Kher

Xenium ranger modules - relabel, resegment and import segmentation modules accept input data as a filepath (xenium bundle) which is the output of the xenium onboard analysis(XOA). Xenium experiments generate...

### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...

## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...

10x has now provided a downsized dataset for code/pipeline testing which is more suitable to be a part of a github branch now that the file sizes are much lower....

### Description of feature Use plotting functions instead of HTML injection into multiqc report

### Description of the bug Attached below is the screenshot of the snap file image based mode should have output paths prefixed with image and not coordinate { "-profile test":...

### Description of feature Baysor fails when the segmentation vector is empty, as it runs the reduce method on an empty vector the error pops up

New multiqc module for Baysor

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### Name of the tool Baysor ### Tool homepage or repository https://github.com/kharchenkolab/Baysor ### Tool description Bayesian Segmentation of Spatial Transcriptomics Data ### Tool output example files [preview.html](https://github.com/user-attachments/files/23231143/preview.html) The preview HTML...