khayatlab

Hi Simon, Thank you for the help. Normalizing the tomogram prior to processing with DeepDeWedge fixed the problem. However, some tomograms become smeared out after denoising. How does the program...

Hi Simon, Thanks for the help. 1. I tried the normalization step but no improvement. ddw complains that "recompute_normalization: False" option does not exist, so I used --no-recompute-normalization. 2. Each...

Hi Simon, I just realised that the top tomogram was CTF deconvoluted but the bottom was not. Let me deconvolute the bottom tomogram and reprocess with DeepDeWedge. I'll post after...

Hi Simon, Unfortunately the CTF deconvolution made no difference to what is posted above. Also, I did both normalization and --no-recompute-normalization. Any other suggestions? Best wishes, Reza

1. Other than the tomogram not being centred, 2. I can't see any problems with it. I'll look at the validation curves more closely. 3. Fitting the model from the...

Hi Simon, I have been masking the data with IsoNet's masking capability. I also mask out the slab. I think the problem with the particular data is that the lamella...