kaw97

Incorrectly indexed interacting residues

2

Bug description: not all interacting residues are indexed properly. When I run PLIP and check the indexing, most of them are correct. However, a few are incorrect. In some cases,...

missing PRIME online documentation

1

Very minor issue, but I noticed the page for the PRIME documentation is dead. Is this a bug or is there no extra documentation? https://hyphy.org/methods/other/evo/PRIME.md Additionally, PRIME requires a JSON...

[e] gene_markers_identification crashed

1

I just had my phylophlan run crash after 5 days and would appreciate any help. I'm running version 3.0.2 installed via conda. I am trying to run phylophlan on a...

Fails at diamond blast, type error: expected string

5

I'm trying to run HGTector for the first time, and encountering problems at the diamond blast step. I'd very much appreciate any troubleshooting help you can give. I have successfully...