Katarzyna Wreczycka

regionCounts doesnt work when save.db=TRUE

1

Hello, regionCounts() just threw me an error: ``` Error in validObject(.Object) : invalid class “methylBaseDB” object: 1: invalid object for slot "coverage.index" in class "methylBaseDB": got class "NULL", should be...

add cores arg to methSeg

8

Hi guys, I added parallel methSeg() with methylDB objects and non-tabix objects. I separated code for running fastseg and mclust into two auxiliary function .run.fastseg and .run.mclust. Parallelization is in...

calculateDiffDSS with methylBaseDB object

1

What do you think about adding a method to calculateDiffDSS to use as an input methylBaseDB and to calculate DMCs per chromosome/chunk? if you are ok with it I can...

On the Bioc Meeting 2018 people advertised SummarizedExperiment R package for working on matrix-like objects. I got suggestions to check out Delayedarrayes and to think about integrating it to genomation....