Kate Stankiewicz

icon location Postdoctoral research fellow at Institute for Systems Biology

Results 4 comments of Kate Stankiewicz

Use on large cohorts

Hello, I am experiencing a similar problem. Were you able to find a way to speed things up at the graph merging step? Thanks!

Use on large cohorts

Yeah, mine took about 2 days for 83 samples on a HPC system. I also don't think the --parallel parameter had any impact.

ValueError: NaN, inf or invalid value detected in endog, estimation infeasible

Hello, I am encountering a similar error. Was there any resolution to this?

RuntimeWarning: invalid value encountered in subtract

Hi Andre, Thanks so much for the reply and explanation! I do note that in the test_results_C3*gene_unique.tsv files, the column 'log2FC_event_count' contains both 'nan' and 'inf' values for some events....