Karoliina Salenius issues

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                                            Karoliina Salenius

Question about minimap2 parameters in long_read_typing.py

Hi! I'm running long_read_typing.py for PacBio -reads for which I have extracted the HLA-regions (originally aligned data to chm13, then extracted hla with HLA*LA and ran bam2fastq). I was wondering...

Solo analysis, phased data

Hi Brent, first of all thank you for the work – Slivar, Mosdepth and Smoove are my go-to tools these days! I'm currently analysing a rare disease in a cohort...