Mikhail Karasikov
Mikhail Karasikov
This PR contains * various cleanups fixing compile warnings * general enhancements such as `const` declarations * refactored uint128 and uint256 with more methods and fixed conversions * support for...
keep successor assignments only in forks to make the routing bitmap smaller
The idea of this change is to keep the alignment separate from search (query). The _query_ mode will perform operations that return annotation labels with counts for the sequences queried...
some minor changes to make it compilable with clang
Dear developers of KMC, It would be great if there was an independent interface for building KMC database similarly to reading implemented in kmc_api/kmc_file. - [ ] API for counting...
Dear Marcus, Is it possible to change the length types to `uint64_t` so that the algorithms work for very long arrays as well (~2^35 of 8-byte words)? I found another...
Support requests with flag `"in_ram": true`, which means the graph would be fully loaded to RAM before querying.
Usage: same as indexing counts, except one needs to add `--enum-headers` instead of `--count-kmers`: ``` metagraph annotate ... --enum-headers --count-width ``` The next transform steps (row-diff, brwt) are the same...