kaltin

Thank you for your reply. Sure, I was testing on the example fast5 files of ont_fast5_api : https://github.com/nanoporetech/ont_fast5_api/blob/master/test/data/single_reads/fe85b517-62ee-4a33-8767-41cab5d5ab39.fast5 It reads the file and gets stuck on the D state. ...

Thank you very much for your detailed answer, James. I tried the argument you suggested after a git pull: `python SquigglePlot.py --single -i fe85b517-62ee-4a33-8767-41cab5d5ab39.fast5` And the job still is in...

I tried it with py2.7 now, and it directly goes into the D state as well.. PS: I do not get the terminal output of `fast5 file is being looked...

I am getting a pretty healthy help section actually (in py2.7): ``` >> python SquigglePlot.py --help usage: SquigglePlot.py [-h] [-p F5_PATH | -s SIGNAL | -i IND [IND ...]] [-r...

Unfortunately, it directly goes into D state again.. 

Thank you for your reply. No, the bigwig files are not empty, they just show no coverage. I will try with the transcript genome file and see if it works.

Hi, Thanks for your reply. No.. I am running my script on a server and it was still functioning.. (it would give a OOM Killer message after aborting).

Hi, thank you for your answer. Yes, the seed was the first possible culprit I thought of, so I confirm that the `pyro.set_rng_seed(#)` is the same in each case, and...

Hi, Thank you for your detailed answer. I tried increasing the number of sampling and made sure that test dataset is -for-sure- the same, by making an external variable that...

Hi, I am sorry for the time lapse in between replies. I was trying to solve the issue. (Unfortunately I am unable to share my code due to privacy regulations...