Avi Srivastava

FillCollisionsAdjustmentInfo is taking too long to complete

14

Hi @VPetukhov , I am trying to use DropEst with one of the 10x datasets from [here](https://support.10xgenomics.com/single-cell-gene-expression/datasets/2.1.0/neurons_900). I downloaded the BAM from the above link and used `dropest -f` mode...

Hi @jperkel , The repo look great ! I I just have a minor suggestion to improve & maintain the robustness of the code. Through github actions and tarpaulin you...

Use nearest neighbor approach to re-cluster contigs.

Add strand specific protocol to pipeline by editing sailfish code.

Exhaustively using all the CPU threads

1

Hi, While running isolator we have observed that in the optimization and sampling stage of the tool it is exhaustively using all the threads available in the system bypassing the...

Problem with SAM file

1

Hi @dcjones, We are interested in using isolator for our analysis but due to some reason, it is segfaulting with the attached data. [testData.tar.gz](https://github.com/dcjones/isolator/files/687830/testData.tar.gz) Following is the backtrace from gdb...