Kyle Hazen
Kyle Hazen
I suppose that there is a better way to make extractJsonNodeValue generic, though as far as I can tell it is only used to parse the labels node
Seems to be a result of the way Jackson deserializes things in the object mapper. Just need to supply the type info. The relevant bit of code is here: https://github.com/seqeralabs/tower-cli/blob/2d10b5b9ab61195b685ff2f809240d88864375be/src/main/java/io/seqera/tower/cli/shared/ComputeEnvExportFormat.java#L135C58-L135C82...
@yuk12 Is there any plan for #229, also is bwa-mem2 still being maintained?
Looks like [#4842](https://github.com/nf-core/modules/pull/4842) is now merged.
This is fixed by #186
@glichtenstein Thanks working on this. I spent some time thinking more about this too and I think I would like to tackle it a different way, here are my thoughts:...
@glichtenstein I don't want to get ahead of myself but I am thinking of something simple like this ```#!/usr/bin/env nextflow // // Demultiplex Illumina BCL data using bcl-convert or bcl2fastq...
@glichtenstein Ok how does this look https://github.com/nf-core/modules/pull/5720 If it's ok with you I think this may be the right approach. Then we can add a filter on file size before...
@glichtenstein Hey, I have updated the test but now I need to debug the Github actions workflow. I am having trouble with the test in docker even thought the singularity...
@glichtenstein should be ready to go now, see my comment here on why the test was failing. https://github.com/nf-core/modules/pull/5720#issuecomment-2215033408