jzheng25

icon indicating a website link junjunzheng.cc

icon company Univ. of Illinois Chicago icon location Chicago, IL icon location Promoting urban analytics for sustainable and resilient cities

Results 4 comments of jzheng25

how to process the RNA-seq data? log10(count+1) or log2(count+1) or TPM or FPKM?

I have similar questions. I think default Seurat using log normalization with 10000 scale factor. Does it mean we should re-normalize fkpm or tpm x/sum(x)*10000 and then take log1p? But...

Can I run cellchat on multiple seurat objects?

Not a member from CellChat team. You can merge the seurat objs (put all cell types in one that you want them to be interact). You will NOT merge the...

Comment on newer python

I found most of the issues was address in TF26. May also add that to front page to compatible with modern GPU

Suggestions for Utilizing hdWGCNA to Study Regulatory Network Changes between conditions

I come here with the same question and thank you for @smorabit referring to the pre-print. I believe, in the preprint, the author compute the gene overlap to quantify the...