jwtobias

Results 4 comments of jwtobias

Velocyto- Seurat - invalid class “LogMap” object: Duplicate rownames not allowed

Also hoping for a solution.

Cirro prepare_data failing on both a Seurat object and an h5Seurat object

I was able to get this working for the h5ad file. I realized that I was using cirro prepare_data on the h5Seurat version and not the h5ad. The bug remains...

after convering in scanpy adata.uns['rank_genes_groups']['names'] contain numbers not gene names

I don't know your specifics, but I saw a similar problem when I used SeuratDisk to write an h5Seurat file which I then converted to h5ad. I saw numbers rather...

Not able to convert loom to seurat

Please add me to the list. Same function, same error.