juansebe1

Hello! I already converted problematic strings to raw strings on the lines 133, 978 and 1109 but, when I try to run the annotation script, ./pgap.py updates and the same...

No, I don't have a .gbk file Can I share you the cwltool.log file and see what you are asking ? Yes, it contains permanentFail Thanks! [cwltool.log.zip](https://github.com/ncbi/pgap/files/15009572/cwltool.log.zip)

Hi Yes, it is a Mac system. I'll take a look at https://github.com/ncbi/pgap/issues/276 and wait for the response of your team, Thanks!

Hi! I've tried again with the same genome and with another from the GenBank, and I could not obtain a .gbk file neither. I'll share with you the cwltool.log file...