J. Sebastian Paez
J. Sebastian Paez
Hey there! This project looks amazing, I am very excited to try it out. I was wondering what you thought about adding to the readme the basic installation instructions from...
### Context Hello! I would love to use it as `mdformat .` (like black) and have it ignore all files I know should be ignored and include any that should...
### Context It has become increasingly adopted the option to store the configuration of many tools inside the pyproject.toml file. example for black: https://ichard26-testblackdocs.readthedocs.io/en/refactor_docs/pyproject_toml.html It would be amazing if mdformat...
[feature request] I was wondering if there is any desire to implement "adding the annotated ions on the peptide sequence string". "P]E]P]TIDEP[I[N[K" kind of deal ... like it is show...
@wfondrie Discussed here --> https://github.com/wfondrie/mokapot/issues/74
Hello there! I was wondering if you had any interest in adding a plugin architecture to the package? By this a mean allowing someone (me) to implement packages that can...
Discussed here #153 The idea is to have a cli flag that works as --dry-run BUT returns a status 1 if any change would have been made on the files....
This PR implements 4 main things, all with the purpose of improving speed of spectrum annotation workflows. 1. A fast-pass for unmodified peptides during the parsing. 2. The option for...
Noticed that `appdirs` is a depencency. This has been deprecated for a time now: https://github.com/ActiveState/appdirs?tab=readme-ov-file in favor of `platformdirs`: https://pypi.org/project/platformdirs/ They both have the same API so the migration should...
Hello! I have been exploring the package and had a question on how the 'precursor_indices' is defined. When I filter based on the precursor index (1 in this case), get...