Jeff Mentch

Conda env does not activate at start even if activate=true

7

I'm unable to get my conda env to activate by default with --miniconda activate=True and need to manually enter `source activate neuro` upon starting the singularity container with `singularity shell`...

pybids error running cifti output from fmriprep in fitlins

7

I've been trying to run cifti files from fmriprep 20.2.0rc0 through fitlins 0.7.0 but have been hitting some errors, the most recent from pybids: `KeyError: "Metadata term 'RepetitionTime' unavailable for...

Add detailed API upload example to docs

5

It is possible via the web interface to run analyses on HBN by searching for it on the web interface (even though it is somewhat out of date/hidden) but it's...

minor bug when uploading custom predictors on the website, you can only upload 1 tsv file not 2. **To Reproduce** 1. Go to predictor upload 2. fill out information for...

(using the web interface) I am seeing some odd behavior where if I clone an analysis with a custom predictor that I uploaded, this feature will persist in the cloned...

Cloning an analysis and removing contrasts removes HRF

1

On the website: If I clone an analysis with 3 contrasts (faces, buildings, faces vs buildings) example id: i6937 and then delete the 'faces' and 'buildings' dummy contrasts in the...

Viewing design reports on 13-inch screen cuts off information

3

This is pretty minor frontend thing and isn't actually impacting me since I usually use a larger monitor, but maybe would impact other people. On a 13-inch macbook screen the...

Failures in celery task not being propagated (upload predictors)

17

I tried to upload some predictors yesterday but today it still says pending

Missing confounds for subject 21 in SherlockMerlin

1

I'm manually removing confounds from data downloaded previously with neuroscout in a local directory: /SherlockMerlin/neuroscout-bundles/wl8RX/events/csf some .tsvs of the confounds have no info for subject 21 but they have information...

SherlockMerlin - subject 37 missing due to run naming discrepancy

3

When running SherlockMerlin and the Merlin viewing task, sub-37 (who saw both sherlock and merlin) seems to be missing from the web interface and resulting analyses Using pyNS it looks...