Jaynish Shah

Understanding columns in the CNA segment output file

1

Dear Christoffer and team, Thank you for developing superfreq. It does pretty much everything we want from WES analysis. All those annotations are great :) I have been looking at...

error in convert.consensus.tree.clone.to.branch

4

Hello, I am running clonevol and 'infer.clonal.models' identified 6 consensus models and Number of unique pruned consensus trees: 1. Next step 'transfer.events.to.consensus.trees' works fine. I get following error in the...

fewer heterozygous variants

4

Dear FACETS team, thank you for developing this tool. I have been getting errors when running `emcncf()` because of an insufficient number of heterozygous variants. The following command reported 931...

input to pyclone-vi

1

Hi there, thank you for developing accucopy. it was relatively straight forward to run and fast! How do we prepare input for pyclone-vi (example: https://github.com/Roth-Lab/pyclone-vi/blob/master/examples/tracerx.tsv) from `cnv.output.tsv`? Specifically, how do...