San Emmanuel James comments

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                                            San Emmanuel James

Error: `data` must be uniquely named but has duplicate columns

Dropping the duplicate column fixed this issue for me

Error running treetime; RecursionError: maximum recursion depth exceeded while calling a Python object

Right, thanks for the response. I totally understand. Please do let me know when the change is implemented. Regards.

Problem when running LMM tutorial

Hi @mgalardini and @johnlees, Thanks for all the insights shared here, I'm also having trouble with inconsistent results running the tutorial, see below: $ pyseer --phenotypes resistances.pheno --vcf snps.vcf.gz --load-m...

Problem when running LMM tutorial

Thanks John, turns out that the sample names (ids) were in decimal point format with some ending with zeros. The trailing zeros would be dropped in some cases creating inconsistency....

Date on circular tree

Thanks @rambaut. That will be super useful.

iqtree2 on m1: "gcc-12: error: unrecognized command-line option '-msse3'"

Hi @corneliusroemer interesting, how would one implement this patch to run it on an M2? Thanks