Jérôme Salignon

new release date?

5

Hello, Do you know when a new release will be released? Version 0.30.0 is not working as it is. The error "Error: package or namespace load failed for ‘sleuth’: object...

Hi there, I find that when using ``` sleuth_prep(gene_mode = F, ...) sleuth_results(pval_aggregate = T) ``` I get no output for b, and many other columns (se_b, mean_obs, ...), while...

Atac-Seq

2

Hi, Thanks for this pipeline. I was trying to use it on atac-seq data. I got the following error message: `Caused by: Process bamCoverage (1) terminated with an error exit...

Hi, I found out that the subsample process is pretty slow. I have tried the reformat.sh function to subsample 155M PE reads in just 100 PE reads and it takes...

Hello, Thank you for this list. Maybe you could add Cactus, an ATAC-Seq pipeline; Publication: https://www.sciencedirect.com/science/article/pii/S088875432400079X GitHub: https://github.com/jsalignon/cactus Thank you, Jérôme