Joe Healey

I've discovered that the segment errors will disappear so long as the directory contains a `.gitignore` file, even if it is empty; `touch .gitignore` inside the repo folder is sufficient.

Thanks for adding to this, I’ve discovered the same thing. Some logic for handling just the situation when a repo is unmodified should be all that’s needed.

This appears to be a problem with the use of `-R representative`, but more specifically with the actual data for that entry... If you query the `assembly_summary` file for that...

That’s certainly how I would interpret that. There may be a good reason for the `na`s in the assembly summary, but if there are, i dont know what they are!...

I don’t know if this is useful, since it would require running over all the downloaded sequences again, but I’ve been tinkering with this: A tool for conversion from assorted...

I think that could well be a good way to go, though patching on to the SeqRecord as it currently exists struck me as possibly a drastic change. I can...

I think the `source` feature would indeed be fine to (re)define as necessary as simply `1:len(seq)` regardless of how the sequence has been permuted. I'm not too familiar with chimeric...

That’d be perfect thanks Chris! I’ve barely dipped my toe in the water, but the only other things I’ve noticeably struggled with whilst using Gooey so far have been (just...

Will give it a try ASAP :) Just FYI, I'm getting `404`s on both of the links to the template `.spec` files at the moment (but this could be me...

Understandable! I don't have much experience compiling software, and less still with `aclocal`/`autoheader` etc. but if I stumble across something I'll be sure to post it up here!