Josh Herr

icon indicating a website link http://joshuaherr.com icon indicating an email [email protected]

icon company University of Nebraska icon location Lincoln, NE, USA icon location I am an Assistant Professor at the University of Nebraska. I study the genomics and metagenomics of plant-microbe interactions with a focus on mycology.

Results 4 issues of Josh Herr

Error fetching `isd-history.csv` from HTTP

4 comment

Session Info ```{r} ─ Session info ───────────────────────────────────────────────────────────────────────────────────── setting value version R version 4.0.4 (2021-02-15) os macOS Big Sur 10.16 system x86_64, darwin17.0 ui RStudio language (EN) collate en_US.UTF-8 ctype en_US.UTF-8...

Best practice to parse data from QIIME

4 comment

Hi @zachary-foster! Thanks so much for your package! I'm trying to parse the taxonomic information output from QIIME, and I am wondering the best way to do this. With command...

Update rsync_from_ncbi.pl

Fixed the ```rsync_from_ncbi.pl: unexpected FTP path (new server?) for na``` error through NCBI.

IndexError: list index out of range

3 comment

This appears to be similar to issue #5, but I am getting this error: ``` Final shred and polish (2019-09-09) To get the best possible consensus, Rebaler now shreds the...