Julian de Ruiter
Julian de Ruiter
I wrote an example RNA-seq pipeline for generating gene expression counts here: https://github.com/jrderuiter/snakemake-rnaseq-star-featurecounts. Would be interested to hear your thoughts/comments concerning the structure/code. I've used wrappers where available, though wrappers...
Thanks! Sure, moving here would be fine. I'll have a look at your comments (especially point 4, which I agree would be ideal if this would also accept URLs and...
Maybe a stupid question, but how are software versions managed with wrappers and conda? Are versions of tools hardcoded in the wrapper, or can I specify which version of the...
Any updates on this? (Would love to have this feature to address keyboard shortcuts etc.)
This duplication is essentially following the existing pattern that's already in place in the hook (if you look at the other methods, there is very often both a sync and...
@basvandriel Can you give me write access to your PR fork + branch? Then I can take over this PR as discussed privately.
I see some of the static checks are failing, can you have a look at this @basvandriel? Afterwards we should be fine to merge if @BasPH agrees.
@basvandriel Do you need any help fixing the static checks?
@osiewicz Any feedback/pointers? Or should I move my questions to the community channel?
I’ve been busy but will pick this up again in a week time.