jpmcelderry
jpmcelderry
I've fixed this issue by adding a line into the est_abundance.py script to skip distributing reads from the highest levels. I guess my question now is whether you all have...
Appreciate it, I will probably continue to just distribute from the kingdom level down then. I'm using the latest PlusPF database.
I actually have a second unrelated question that I can open a new thread for if you prefer @jenniferlu717 : would Bracken be inappropriate to apply to transcriptomic samples? I'm...
For anyone with this problem in the future, `deconvolution_fit_SV` has an argument gv, or 'genome version'. This is set to "hg38" default, and needs to be manually set for the...
> @jpmcelderry Hello! Sorry for lately reply, I want to know, if I used my SV data, there is no need to change the 'genome version', right? Hope your help~...
I was investigating the same issue with my own data. According to my reading of the code, the 'mask_low_complexity.sh' script masks the library.fna file in-place, and then it creates an...