Jun Sung Park

[Ecotyper] Error in NMF step at Tutorial1 using user-defined profile

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Dear EcoTyper team, Hi, all! Hope you been well and thanks so much for sharing amazing tool. I was following tutorials using new TCGA data with in-house scRNA-seq dataset. Initially,...

Dear @jianhuupenn, Hello! Hope you been well. I happen to have a slide that has two tumours and have been struggling to grasp [1] multiple contours [2] individually detect tumor/edge...

[CytoCommunity] Using visium data

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Dear authors, Hi, all! Thank you so much sharing great tool to community. I happen to come across you used DLPFC 10x visium data on CytoCommunity as well but can't...

[Bug] sopa write explorer fails after H&E image is added

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Hi, @quentinblampey! Hope you been well. I was hoping to access registered H&E image per se through explorer's write function. (Is it correct to expect 'sopa explorer write' will create...

[MuDataSeurat] Install error

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Dear MuDataSeurat team, Hi, all! I am trying to install MuDataSeurat through remotes/devtools/local but all come across with following error. Can you help me out whether there's some issue on...

[Error] Running seg2explorer

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Dear segger team, Hi, all! Hope you been well and thanks for the sharing tool for community: I am running the most recent segger_dev repo. with Xenium_v2 dataset and have...

[Visualisation] Baysor-like output

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Hi, @EliHei2 ! Hope you been well. I've been testing `segger-dev` on in-house Xenium dataset as purpose of head-to-head comparison with Baysor. I have final output like following but somehow...