Josué Barrera Redondo

Hello! Did you managed to solve the problem? I'm getting the same error, and I already verified the correct structure of the newick tree using this tool: https://github.com/ila/Newick-validator

Thank you for the quick reply. Unfortunately, I tried to run cactus using a simple newick tree with and without branch lengths. This is the error I got: node525 2021-09-13...

Dear Paul, Thanks for reaching out! You are right, the new script for faster gene age assignment seems to mistake the "|" characters in the FASTA headers with column separators,...

Dear Paul, @RocesV just fixed the issue with the fast headers containing `|` characters. Please download the newest version of [FASTSTEP3R](https://github.com/josuebarrera/GenEra/blob/main/FASTSTEP3R) and let me know if this fixed your problem....

Dear Paul, Thanks again for your useful comments! The first enhancement you propose seems quite interesting, but I suspect it would not be compatible when applying additional options to the...

Dear @Proginski , I apologize for the late reply. I've been dealing with a lot of paperwork and applications these last few weeks. Unfortunately, I haven't been able to implement...

Dear Paul, It is possible to attach two `diamond` outputs together using `cat` and feed them to `genEra`. The only problem with your approach is that `extra_Diamond_results.bout` does not contain...

Dear @CaiCheng1996, We appreciate your interest in GenEra! I will gladly help you. It seems that the pipeline had an error identifying the NCBI Taxonomy ID of your organism and...

Dear @BoBo2021jenny, I forgot to reply to @Galaxy-228, my appologies! The behavior you mention is not normal (_e.g._, an analysis with _A. thaliana_ shouldn’t take more than a day to...