josetb

python is: Python 2.6.1 (r261:67515, Jun 24 2010, 21:47:49) [GCC 4.2.1 (Apple Inc. build 5646)] on darwin I did install cython (Cython version 0.16) I have to say that I...

output of install is: /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'use_2to3' warnings.warn(msg) running install running bdist_egg running egg_info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links...

this may be helpful, though (ls -r \* in PyVCF's directory): LICENSE README.rst setup.py tox.ini PyVCF.egg-info: PKG-INFO dependency_links.txt requires.txt SOURCES.txt entry_points.txt top_level.txt build: lib.macosx-10.6-universal-2.6 temp.macosx-10.6-universal-2.6 build/lib.macosx-10.6-universal-2.6: vcf build/lib.macosx-10.6-universal-2.6/vcf: **init**.py filters.py...

ok - no errors on install. but when I import this in python it tells me that the module is not installed... I'm pasting the install output below. I don't...

Got it - had to install ordereddict but after that I can import vcf with no issues. All sorted out. Great thanks for this and apologies for the newb issue....

ok - if there's anything I can do to help, just let me know On Thu, Aug 23, 2012 at 4:02 PM, James Casbon [email protected]: > No, I think this...