Jose Nimo
Jose Nimo
Commenting here to wait for better solution :)
Dear @quentinblampey and @altunbulakli, I am receiving a similar error while trying to process a subset dataset. Details: I am trying to run sopa through snakemake locally on a virtual...
Hey @quentinblampey , thank you for your quick responses. Update: 1. Files are actually not there, only found patches and patches_file_image inside .sopa_cache 2. toy example does not run, and...
snakemake version 7.32.4 Windows Server 2022 Standard All good, thank you for the info. I almost got it running on SLURM :)
Sorry @marsdenl, havent seen this before, can you share a bit more? you are running on snakemake right? default paramenters?
Hey @quentinblampey, just pitching my two cents here. I would like something like expand_radius_ratio that would allow me to store the expanded shapes. I use skimage.segmentation.expand_labels for my tif masks....
Hey spatialdata devs @melonora @LucaMarconato I report that this still happens on `spatialdata 0.3.0` with `napari-spatialdata 0.5.5` https://github.com/user-attachments/assets/3d786209-0319-4b40-bcb1-89f66c33df7f Context: this is a subset (15 x 5000 x 5000) from a...
Hello devs, I have a really cool function on my hands, and I saving a summary plot is proving to be quite difficult. So I am kinda restarting this issue....
I really like this idea, voting for visibility 👍
I have not updated utils.py, will do that :) You mean hacking the `utils.py` or just listing all the data_paths in snakefile and running it through that (this seems the...