Joon An

icon indicating a website link http://joonanlab.github.io

icon company Korea University icon location Seoul, Korea icon location 0 1 A T G C

Results 2 issues of Joon An

Error on the example script

Hi, In this tutorial code, `get_sample_by_name` is not defined. Can you tell me where I get this function? https://github.com/bcgsc/pori/blob/df616ca4f9e1bb30a0807129c5c16e877365692b/docs/graphkb/scripting/Annotate_a_VCF_with_GraphKB.ipynb#L439

samtools mpileup

10 comment

Hi Thanks for the tool. It's really nice. One thing I noted is that samtools in your code use old version and mpileup `-t` and `-v` is deprecated in the...