Jonathan Lym

Results 16 issues of Jonathan Lym

I use Pygal as a dependency for my scientific package. Is there a paper I can cite [similar to this page](https://www.scipy.org/citing.html)?

Many floating point unit tests use numpy's [``assert_almost_equal``](https://numpy.org/doc/stable/reference/generated/numpy.testing.assert_almost_equal.html). However, this sometimes incorrectly passes for very small numbers. Instead, we should use [``assert_allclose``](https://numpy.org/doc/stable/reference/generated/numpy.testing.assert_allclose.html#numpy.testing.assert_allclose) instead.

bug

Upon reading the collections page, I realized some attributes could be updated: | Variable | Old Type | New Type | Notes | |--------------------------------------------------------------------------|-----------|-------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------| | ``pmutt.empirical.EmpiricalBase.elements`` | ``dict`` | [``Counter``](https://docs.python.org/3.8/library/collections.html#collections.Counter)...

enhancement

The current test suite has several problems associated with it: 1. The equations used to calculate tests are not thoroughly documented 2. If equations are used in the test suite,...

enhancement

Currently, we can only read a handful of properties from Gaussian ([complete list available on our documentation page](https://vlachosgroup.github.io/pMuTT/io.html#module-pmutt.io.gaussian)). @lqcata suggested some additional properties to add. He also provided the associated...

enhancement

Thanks again, Sherry for pointing out that some links in the documentation were broken. As we discussed, could you list them here? All I would need is the URL of...

docs

@uditgupta0912 suggested adding the ability to predict an equilibrium composition given a reaction.

enhancement

Currently, converting a model object (e.g. `StatMech`) to a `Nasa` object is done in the following steps: 1. Use the model object to generate `CpoR`, `HoRT`, and `SoR` data. 2....

enhancement

Currently, there is no functionality to read NASA9 polynomials from a thermdat file. This feature will be useful as this is the standard format it is stored.

enhancement

Currently, we use [PyGal](http://pygal.org/en/stable/) to generate interactive plots. However, it is no longer updated and it can be rather esoteric. We should replace PyGal with [plotly](https://plot.ly/). This library is more...

enhancement