Jonas Scheid
Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...
This feature request came up in https://github.com/nf-core/mhcquant/issues/317 Currently, the xgboost models are always downloaded to `$HOME/.ms2pip`. In some cases that could lead to permission issues, but the major advantage here...
Follow-up of #46567 ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a recipe, use...
Small release: - Merge template update 2.13.1 - Remove `Channel.view` statement that has accidently sneaked its way into the previous release ## PR checklist - [x] This comment contains a...
### Description of feature The pipeline should also be able to predict putative Neo-epitopes based on structural variants (SV). Currently we only support SNVs and small indels. Predicting Neo-epitopes based...
### Description of feature Add syfpeithi as a standalone module in new structure https://github.com/nf-core/epitopeprediction/issues/205
### Description of feature Add netmhcpan and netmhciipan as a standalone module in new structure https://github.com/nf-core/epitopeprediction/issues/205
### Description of feature Add mhcflurry as a standalone module in new structure https://github.com/nf-core/epitopeprediction/issues/205
### Description of feature Add mhcnuggets as a standalone module in new structure #205
### Description of feature I think we need to remove epytope from [check_requested_models](https://github.com/nf-core/epitopeprediction/blob/master/bin/check_requested_models.py) since we will not use the prediction interfaces anymore and implement checks for supported alleles and peptide...