Jonas Freimuth
Jonas Freimuth
Hello, when trying to download a non-exising (because deleted) GEO Series I get an `UnboundLocalError`. Minimal example, that particular GSE is what raised this issue for me. According to its...
Running pytest (in a venv) on commit `6cd14fb` *sometimes* fails with the following error: ``` (.venv) jfreige@sl-akali-p-cs1:easy-entrez (main)$ pytest =================================================================== test session starts ==================================================================== platform linux -- Python 3.10.12, pytest-7.4.2,...
Firstly this improves some of the shortcomings of the jet scale (see [here](https://ai.googleblog.com/2019/08/turbo-improved-rainbow-colormap-for.html)). Secondly, this removes the need for the non-free `matlab` package.
When using `AddMetaData` to add metadata columns via a `data.frame` object, the resulting added columns contain only `NA`s instead of the actual data. ```r library("Seurat") dims
Deconvolution errors should better point out which problem with the data caused it, for example ``` Error in { : task 1 failed - "0 (non-NA) cases" Calls: deconvolute ->...
For reproducibility it would be helpful to be able to infer the pipeline version used to generate the reports.
This is probably due to the length of *each* fastq file being computed again. This information must already be contained in the QC reports.
Hello, I love this package, thanks to everyone who has contributed to it so far! I also love the logo and think it is very cute. However sometimes I think...
Hello again, I am currently trying to integrate SpecHLA into a Snakemake pipeline (via the post-deploy script mechanism) and running into the issue that the tool requires its own conda...