scSplit icon indicating copy to clipboard operation
scSplit copied to clipboard

verified publisher icon jon-xu
→

Metadata

Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.

Results 4 scSplit issues
Sort by recently updated
recently updated
newest added

Running time

1 comment

Hi, Running _scSplit count_ is taking forever. I assume is because the number of variants from freebayes is pretty high (>1.3M). I'm running a pool of 4 samples, ~11k cells....

IBDgenomics avatar IBDgenomics

compare mixed samples together

1 comment

Hi, I performed the workflow on multiple mixed samples, retrieving correctly the different genotypes, per sample. I was wondering what you can suggest to compare the different mixed samples, that...

laurajaras avatar laurajaras

Question about whitelist barcodes

1 comment

Dear authors. Thank you for an excellent tool for multiplexing samples for sc-analysis. As I understand it, the whitelist barcodes are supposed to be indexes or GEM barcodes from CellRanger,...

MyriamJen avatar MyriamJen

Update README.md

bcftools filter command in the README has expression %QUAL>30, but the expression should be QUAL>30.

eroberson avatar eroberson

← Metadata

39
Stars
9
Forks
Watchers

Owner

verified publisher icon jon-xu

Metadata

Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.

Back