John Reeves
John Reeves
@twsaari Is there a fork/branch with this functionality implemented? This directly solves a problem that we have been facing with a container that needs its input data in a particular...
Thanks @zhouzhendiao :)
Thanks for the feedback. We are building an atlas of SC data from multiple patients, caputred in different batches, etc. Ideally we'd like to use this atlas dataset as a...
Perhaps the cleanest and simplest way to incorporate this kind of functionality is something like the following: `dvc update --all` (download all files that have `dvc import-url`ed from source into...
Thanks @dtrifiro for your efforts and @skshetry for the workaround with `update --recursive`. This gets me over the immediate hurdle that I'm facing, but @pmrowla is correct that it does...
Any progress on this enhancement?
This used to work, but no longer. Perhaps GitHub has changed its API and broken the integration with Slack?
Interesting discussion! I'm also attracted to the idea of providing a `--gene_list` of highly variable genes. I see that `scanpy.pp.highly_variable_genes()` offers three 'flavors' for selecting genes: 'seurat' (default), 'seurat_v3' and...
> This should be fixed in the dev version of pak. In case anybody else is wondering how to install the dev version: https://pak.r-lib.org/reference/install.html#stable-rc-and-devel-streams
> What commands are you using? Any command that requires checksum calculations for indexing. This includes `dvc add`, `dvc commit`, `dvc import` etc. The most frustrating part involves importing data...