Johnny Tam
Johnny Tam
Same error here.
Re-created a conda environment and installed foldseek with `conda install -c conda-forge -c bioconda foldseek` Still getting the error, as follows: ``` easy-search AF-A0A0G2KTI4-F1-model_v2_AFCT-OUT_single_A130-1136.pdb /data/cltam/script/foldseek/database/ foldseek_aln.m8 tmpFolder MMseqs Version: 3.915ef7d...
Solved! My silly mistake. Thanks!
Hi Heinzinger! Thanks for your prompt reply and the link for human protein embeddings! Do you mean you may still have the per-protein embeddings for UniRef50 or something like that?...
Currently, I am using [bio_embeddings](https://github.com/sacdallago/bio_embeddings) to extract embeddings from ProtTrans model, which is quite slow so my gut feeling to scaling the extraction to the size of UniRef50 should be...
Luckily, I found this -> http://sigmat.ugr.es/~amelia/FoldEmbeddings/ I will first download the embeddings to see how the data goes! :)
Hi @mheinzinger ! Eventually I want to compute ProTrans embeddings for UniRef90 and I have tried your script to estimate the computation time required: which is >1.5 year on my...
> @johnnytam100 , probably I can help you with the computational resources and parallel computing to speed up. Look forward to chatting with you. Hi Wang, thanks for your offer!...
Hi @hainm ! Thanks for the advice again. Then I am curious if you know a way of rendering movie in a loop, like this but doesn't work: ``` from...
Same request for such a built-in feature.