Julin Maloof

To explore this a bit more, I: 1) installed cloudml from this repository rather than CRAN 2) Used the example mnist script: ``` library(cloudml) dir.create("mnist-train") file.copy(system.file("examples/mnist/train.R", package = "cloudml"), "mnist-train")...

And even worse, if I change the number of threads to 1 I get very different results: ``` ~/Assignments/assignment-09-jnmaloof/input/Brapa_fastq$ for i in $(seq 1 10); do echo "run $i"; fastp...

Examining thread dependency a bit more: ``` for t in {1..8} do for i in {1..2} do echo "threads $t rep $i" fastp --in1 GH.lane67.fastq.gz --out1 GH.lane67.trimmed.fastq.gz --length_required 50 -q...

If I revert to version 0.20.1 then things are repreoducible (and give me a different result than any of those above: 42341 reads are removed for being too short). That...

It works correctly when I use CodecZlib.jl . Thanks!

good luck, and thanks for making these tools available! Julin Maloof Professor Department of Plant Biology 1 Shields Ave University of California, Davis Davis, CA 95616 (530) 752 8077 On...

You can download my sample dataset here: https://bis180ldata.s3.amazonaws.com/downloads/Illumina_Assignment/GH.lane67.fastq.gz My commands are in my earlier posts in this thread.

Those look like warning messages, it might work anyway, did you try it? What is the final output line after after running `make`? If it doesn't say "Error" you are...