Jonathan Mugan

I've got 1 million RDF triples and I get the error ``` error cannot allocate memory There is insufficient memory for the Java runtime environment to continue. Native memory allocation...

Does anyone know what might cause `malloc: can't allocate region`? It happens immediately. The machine has plenty of free memory. ``` (base) bob@bob:~/bin/cc_alberta/commandcenter/bin$ ./CommandCenter CommandCenter(30038,0x10bdd6dc0) malloc: can't allocate region :***...

Configuring to run commandcenter

6

Sorry for the stupid question. I'm trying to run commandcenter and it just says "Failed to start CCBot." My `laddermanager.json` looks like this ``` { "CommandCenterPath": "/Users/jmugan/bin/Sc2LadderServer/build/bin/Bots/CCBot/CommandCenter", "LocalReplayDirectory": "./Replays/", "MaxGameTime":...

TargetRule wrong type for pattern?

1

Here https://github.com/medspacy/medspacy/blob/master/medspacy/target_matcher/target_rule.py it lists the type for pattern as `pattern: Optional[Union[List[Dict[str, str]], str]] = None,`. But in spacy the dicts can have dicts. Here's my rule: ``` TargetRule("billybob", "SEABASS", pattern=[{"LOWER":...

Runtime error for overlapping span

4

When I use TargetMatcher to try to overwrite a span, I get ``` Traceback (most recent call last): File "/home/jmugan/anaconda3/lib/python3.8/site-packages/medspacy/target_matcher/target_matcher.py", line 163, in __call__ doc.ents += (span,) File "spacy/tokens/doc.pyx", line...

When I run ``` python -m allennlp.run evaluate \ --archive-file /Users/jmugan/text_data/bob/models/model_np_pp_scaf_fsp.tar.gz \ --evaluation-data-file /Users/jmugan/text_data/bob/data/fndata-1.5/test/fulltext/ ``` I get the error ``` allennlp.common.checks.ConfigurationError: "alternating_highway_lstm_cuda not in acceptable choices for model.stacked_encoder.type: ['intra_sentence_attention', 'multi_head_self_attention',...

stupid question, any way to avoid running out of memory?

2

If it put an input of 17,000 tokens into `model.generate(x, temperature)` I get `libc++abi: terminating due to uncaught exception of type std::runtime_error: Attempting to allocate 19081554496 bytes which is greater...