Jean Monlong
Jean Monlong
Apologies if I missed this information. I noticed that the same variant can have multiple entries in the output VCF. The ALT field seems to suggest it's because they represent...
We tried out manubot for [our manuscript](https://github.com/jmonlong/manu-vgsv) and one part that required some manual work was receiving feedback from many people in a short time. In our case we had...
We tried out manubot for [our manuscript](https://github.com/jmonlong/manu-vgsv) and one part that required some manual work was dealing with the supplementary information. Maybe we missed something and there are easier ways...
We noticed that some references didn't format well and that it always happened when there was a consortium in the author list. Also, the consortium name was missing. There is...
I'm benchmarking SVTyper and making PR curves. I have two questions to make sure I'm comparing SVTyper as I should. I'm using the QUAL field to make the curve. I...
I noticed that some paths or reads stay highlighted even after the mouse has left them. It looks like it only affects those with a "curve". Simple rectangle paths are...
Right now there is a parameter to define regions to run the evaluation on. Basically the overlap are computed and then the SVs are filtered to keep only the ones...
This was an idea to make it easier to distinguish separate tracks (with different assigned color palettes) and still visualize the mapq information by making the reads more transparent the...
This fixes two issues with the Python bindings. 1. The `has_distances` functions overloaded a static function and another function, and it created errors with importing the bdsg module in Python....