Jose Borreguero

_gen_relevant_images misses some images

1

I think there are scenarios when `_gen_relevant_images` misses generation of some needed image. See picture below for a scenario with 2D periodic boundary conditions. The query particle is located at...

Add "flip" option to store most recent records

5

**Example:** `./pg_sample --ordered --flip ` ```bash ./pg_sample --help --ordered Select from the table records after ordering the records by primary key value. --flip When passed as an option, the records...

class Foldernames and user guide snippet

13

Signed-off-by: Jose Borreguero

How to properly reference ipywidgets elements in sphinx documentation for third party packages?

4

Referencing ipywidgets components in RST documents doesn't include a link after building In my conf.py file: ``` # Domains for intersphinx inventory file objects.inv intersphinx_mapping = { 'ipywidgets': ('http://ipywidgets.readthedocs.io/en/latest', None),...

write a test for cylindrical selections tokens using the periodic kdtree

1

[test_atomselections.py](https://github.com/MDAnalysis/mdanalysis/blob/develop/testsuite/MDAnalysisTests/core/test_atomselections.py) is lacking a test using the `CylindricalSelection`, `CylindricalLayerSelection`, and `CylindricalZoneSelection` distance-based atom selections employing distance searches with `PeriodicKDTree`. ### Currently version of MDAnalysis: (run `python -c "import MDAnalysis as...