Jouni Siren

icon indicating a website link https://iki.fi/jouni.siren/

icon location Santa Cruz, California, USA icon location Algorithms and bioinformatics at the UCSC Genomics Institute.

Results 3 issues of Jouni Siren

SSE4.2 detection fails

6 comment

When SDSL is built on an AMD Opteron 6174 CPU with g++ 4.9.2, the generated code does not run on that CPU. `CMakeModules/CheckSSE4_2.cmake` detects the support for a builtin popcnt...

enhancement

Metadata for haplotype sequences

This is my initial proposal for metadata lines that store metadata for (possibly fragmented) haplotype sequences. I first described this in issue #128. Based on the discussion on the HPRC...

Sequence metadata in pangenome graphs

We often use the GFA 1.x format for passing pangenome graphs from one tool to another. However, the specification does not offer a standardized way to include all the information...