James Lingford

I'm having the same issue. The `expandaln` step in `colabfold_search` hangs for hours. Was there a fix for this? I'm using the GPU mmseqs binary from `https://mmseqs.com/latest/mmseqs-linux-gpu.tar.gz` and localcolabfold-v1.5.5

Having the same issue here. Updating to v1.5.5 seems to have broken a jax dependency

Running that script did the trick. Thanks!

I'm also having the same issue with the --amber flag throwing an error. In previous versions I would make sure that a gcc module was loading in the SLURM job...

Yes! That fixed it and the amber relax step works now. Thanks so much

Hi, I'm experiencing the same issue when trying to start a GPU server with a targetDB_pad. A sleep command after starting the GPU server doesn't resolve the issue for me...

No, this is one I built with `mmseqs createdb` and contains 3261 sequences of roughly 400-900aa length. The query fasta file is also my own: ``` >NuoD MTEKYAPPIPETSDYAISVGPQHPTHKEPVRFIFQVKGETVQDVDLRIGFNHRGIEKAFENRTWLKNLYLVTRLCGICSVAHQLAYVHAAEKCMIIQDSVPERAHFIRLIIAELERVQSHILWYGVLAHDTGYDTLFHITWRDREIVNDILELISGNRVNYAMYTLGGVRRDISREQKEKIVPKLKDLRKKCEYHRAVMMKERSFIVRQKGVAILSKKDAKKYCAVGPTVRASGVNIDLRKVDPYSVYDKVSFDVPLYSEGDILGGLYNRLDETLISIDIILDALDAMPAGDIRLPWREVPRRPETSEGIQRVEAPRGEDIHYIRSNGTDKPDRHKIRAPTFQNFPSLVHRLKGVQVADIPPVIRVIDPCIGCCERVTFVKAGSRKKLTLNGHHLVSRANRFYRSGTKVLDF ```

Hi, is there any update on this bug? I'm getting a similar error message with the example .fna and .gff files provided in this repo: "Not enough GFF files are...