Jeff Law

Fixes latest issue in #1

List all required packages

1

to facilitate installing required packages with `pip install -r requirements.txt`

signal (7): Bus error on 5000+ genes

2

When running PIDC on a large dataset of 5000+ genes, I'm getting a `signal (7): Bus error` from Linux similar to the one reported [here](https://github.com/JuliaLang/julia/issues/26222). Do you know if there's...

Clarify that make lock should be run without sudo

1

I ran `sudo make lock`, and then `CURRENT_USER` evaluated as `root`, making it so I still wasn't able to run chomper without sudo

The AGORA genomes fasta files download "contains the fasta files for each microbe present in the AGORA collection." But it only contains the 773 microbes of v1 (or v1.01?). I...