Jérémie Kalfon

Results 16 issues of Jérémie Kalfon

**Describe the bug** After running `sudo make startup` and restarting I do not see any logged input on /var/log/keystroke.log and I do not see the task on my activity monitor....

bug
mac

hey I have this error : ` fatal error: 'jconfig.h' file not found ` full trace: ``` The directory '/Users/jeremie/Library/Caches/pip/http' or its parent directory is not owned by the current...

building

Hello GATK team! ## Bug Report ### Affected tool(s) or class(es) mutect2 ### Affected version(s) - Latest public release version: 4.2.6.1 ### Description getting fail for all scatter task with...

bug
Mutect

## Feature request Running mutect2 (GATK v4.2.2) in tumor only mode on WES samples and asking it to use/keep germline and PON mutations. I have noticed that mutect never sets...

Mutect

Hello ! thank you for this nice package! We are building a chat app and would need to be able to have action from within the pop up. We will...

enhancement

Running opencravat from latest version of: the `karchinlab/opencravat` docker image with parameters: `oc run CDS-00rz9N.hg38-filtered.vcf.gz -l hg38 -t vcf --mp 2 --module-option vcfreporter.type=separate -d out -a spliceai alfa cscape dann...

I was wondering if this is not what we would want in the case where n_components is >2

to merge after fix_for_numba_jit. ability to choose different ks for each, can really improve the algorithm's ability to perform mnn when we have very diffferent dataset sizes. like 10 to...

when trying to use upload_entities for another entity than participant, sample, sampleset, it never works. df.index.name = [entityname]_id upload_entities(entityname, df) getting ``` APIException: Sample_group import failed.: (400) : { "causes":...