jjv5

CMake is looking for BAMTOOLS_ROOT/lib but BAMTOOLS creates lib64

3

In Cmake, FindBamTools.cmake: find_library(BAMTOOLS_LIBRARY bamtools PATHS ${BAMTOOLS_ROOT}/lib PATH_SUFFIXES bamtools ../lib) so finding BAMTOOLS fails no matter what env vars are set to. bamtools 2.5.0 installs in library directory named lib64,...

Conda install does not include libbamtools

1

Conda installation of dropEst 0.8.6 does not provide a copy of libbamtools. This makes the install unusable since libbamtools is not available in conda. $ ./dropest ./dropest: error while loading...

License?

1

Is there a license? Is this open source, no commercial restrictions?

Biom support please

3

Direct output of abundances in biom format would help with other downstream analysis tools like QIIME and STAMP. http://biom-format.org/

Set project name with CLI

1

### Problem description Project info can be set from CLI like this: project description set except for name. It would be useful to include 'name' in this also: project name...

Option to not add path to bash_profile

2

### Problem description It would be very useful to have a flag or option to _not_ add PATH to any startup files upon pixi install. We don't wnat anything added...

VCFtools - 0.1.15 is used in the examples in the README. It shoul dbe listed as a requirement.

bcftools 1.8 causes a lot of headaches during installation. Monopogen isn't really portable because of this dependency. It would save a lot of time and effort for a lot of...