Zhang Jingjing

Yes, I didn't add the `-dir` argument the first time I tried to run it. But I can't find the output file in the current directory where I ran the...

hi, I wonder if anyone knows where this file `queryrepeatdatabase.pl` is?

$ bcftools concat test.lst.genotype.vcf/chr21/*.vcf.gz | grep -v ^# | grep -v "LowQUAL" |grep -v "LowQD" |less -SN ... 235 chr21 46237437 chr21:46237437:DG N 255 PASS ABHet=-1;ABHom=1;AC=2;AF=0.5;AN=4;END=46238759;MaxAAS=22;MaxAASR=1;MaxAltPP=0;NHet=0;NHomAlt=1;NHomRef=1;NUM_MERGED_SVS=1;PASS_AC=2;PASS_AN=2;PASS_ratio= 236 chr21 46237437 chr21:46237437:DG.0...

I am also concerned about this issue.

SRR19880797检查 [mem_sam_pe] paired reads have different names: "SRR19880797.5358018", "SRR19880797.10839728" [E::sam_parse1] CIGAR and query sequence are of different length [W::sam_read1] Parse error at line 9982028 [main_samview] truncated file. Mapping failed samtools...

I also meet this error. less SRR19880797_sort.1.fastp.fastq.gz （参考）@SRR19880797.5023185 5023185/1 CTGTGGCCCTGTGCCAAACCTGGAGCAGCTGCCTTTAGAGGCCAGGAGGGCTACTTCCCGTTTCCTGAGCACTGTCCCTCTGTCTGCAGGAGTGCTGCTG + FF@FFFFFFFFGFFFFFFFGAFFEFFFFFFGFFFFGCFFGFEFGGF>GGFFFFGGFFGFFFGGBGGFGGGFFGGFFGFFFBGFGFFFFFDFFFGFC （报错）@SRR19880797.5023186 5023186/1 CTGGGAAGAAGCACAGACCACCAGGCCCCCTGTTCTCCTCCTCAGATCCCCTTCCTGCCACCTCTTCCCATTCCCAGGACTCAGCCCAGGTCACCTCGCT + GGFFFFFFFFFFGFFGEFFGGFFFGGFFFFFGGG>FFGFGEGGEEFGFGGFGGFFGGGFEFGFFEFFGFGFGFGGFFFFFFD>EFFGGDFFGG@GFA;FF （参考）@SRR19880797.5023187 5023187/1 AGGACACGGTACAAAAGGGCAGCCAGGCAGGGTTGGAAGGTGGGGTCTGAGGGGTTTCCACCTGCCCTCTCCCATCCTTCCAGGTTTTGGCGGCAGATGG + F?FFFFGFF/FGFGFF>FFFFFFFFFFFFFFFFFFFFEFFFFEFFD@FFCFFEFFFFGGFFFFDFDFFFGFFFFFFFFFEFFGFBFGFFECFF:DFBFFF less SRR19880797_sort.2.fastp.fastq.gz （参考）@SRR19880797.5023185 5023185/2 GGCTGGCCCAGCGCCAGCGTCGGAGCGCCGGCCCCCTCCCCGGGCCGCCCCCACCCAACCAGACCCTCCAGCGCGTGCCACCGGACCTCGTGTCCTAGAC + )C:5=61?46

 我也是有同样的报错，我没有缺失值，但不明白为什么也报了这个错误

## Command vg]$ ./vg --version FATAL: kernel too old Aborted (core dumped) vg]$ file $(which ./vg) /xxx/software/VG/vg/vg: ELF 64-bit LSB executable, x86-64, version 1 (GNU/Linux), statically linked, for GNU/Linux 3.2.0,...

The length of "left + right" sequence is the 368, why there is a plus flag in the end? Can I ignore the plus flag?

Hi, do you have solved this problem? I meet the same problem. normal SV type, such as DEL, INS, DUP, all have FT field but BND no FT field, before...