jiarong
jiarong
I also think this option would be VERY useful. Metagenome samples nowadays can easily generate 100's of thousands of contigs. Writing each of them as a file can be very...
Hi, you can use "--prep-for-dramv" option to get that file. https://github.com/jiarong/VirSorter2#dramv-compatibility
Do you have "=" or ";" in your sequence headers? Those can cause errors like above. If so, you can just remove "=" and ";" in your sequence header for...
Good suggestion! We have seen NCLDV model have high false with eukaryotic sequences, but are not aware of the mitochondria specifically. Some manual checking should be done on those NCLDV...
Right, NCLDV can have quite a few genes similar to hosts, which is more prone to false positives. The table you attached shows gene % from each group, not the...
Hi, can you post the error message in `all-score-dsDNAphage.log`?
Looks like the error was caused by scikit-learn version mismatch. It is likely that some setting in your system PATH prevented VirSorter2 from using the scikit-learn version (0.22.1) installed during...
Hi, I need to update database for manual install. Could you use the command: instead for now? `virsorter setup -d db -j 4`
Sorry for the late reply. It looks like failing to install the required packages. Does the server have internet connection?
The conda installation might have issue with certain OS with specific setting. I recommend the [singularity version](https://github.com/jiarong/VirSorter2#option-3).