Jonathan Goodson

The issue is that you cannot pickle LMDB env objects. Setting num_workers=0 prevents the need to pickle anything since the main process original object handles retrieving data. The real solution...

I have not troubleshot this in great detail, but I reproduced the issue with a fresh MySQL database. Some basic poking has indicated that what is happening is that rows...

It appears that `straw` refers to https://github.com/aidenlab/straw although the current versions of the [hic-straw PyPI package](https://pypi.org/project/hic-straw/) installs as `hicstraw` and not `straw`. I was able to work around this by...

I have a different, but possibly related, error with the same error message when trying to cluster 500k short sequences. This is on the current Master. ``` ❯❯❯ ~/software/MeShClust/bin/meshclust experiment.fasta...

Here is a sample of some data that causes this error. https://gist.github.com/jgoodson/253f56ef4c49388304eb51fc42b9eeba With this input, a call to MeShClust with default options does not crash and returns `Identity value does...

> Perhaps OOD could expose a functionality for signing certificates for users securely, without exposing any keys to unprivileged users? Some root-owned daemon that just signs certificates locally for the...